SRX11023670
GSM5348079: HUVEC CEBPB; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CEBPB

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
HUVEC
cell line
HUVEC
cell type
Endothelial cell
antibody
0.6 µg ab32358 (AbCam)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was isolated by phenol- chloroform isoamylalcohol extraction and ethanol precipitation NEBNext Ultra II DNA Library Prep kit for Illumina (New England Biolabs).

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
19812086
Reads aligned (%)
88.9
Duplicates removed (%)
18.2
Number of peaks
486 (qval < 1E-05)

hg19

Number of total reads
19812086
Reads aligned (%)
88.0
Duplicates removed (%)
18.5
Number of peaks
451 (qval < 1E-05)

Base call quality data from DBCLS SRA